IL_8OIQ_020
3D structure
- PDB id
- 8OIQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GAG*CUAAC
- Length
- 8 nucleotides
- Bulged bases
- 8OIQ|1|B8|A|323, 8OIQ|1|B8|U|335, 8OIQ|1|B8|A|336, 8OIQ|1|B8|A|337
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OIQ_020 not in the Motif Atlas
- Geometric match to IL_5J7L_265
- Geometric discrepancy: 0.1264
- The information below is about IL_5J7L_265
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_06549.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8OIQ|1|B8|G|322
8OIQ|1|B8|A|323
8OIQ|1|B8|G|324
*
8OIQ|1|B8|C|334
8OIQ|1|B8|U|335
8OIQ|1|B8|A|336
8OIQ|1|B8|A|337
8OIQ|1|B8|C|338
Current chains
- Chain B8
- 16S rRNA
Nearby chains
- Chain BA
- uL22m
- Chain BJ
- Mitochondrial ribosomal protein L34
- Chain BL
- Mitochondrial ribosomal protein L2
- Chain BN
- Mitochondrial ribosomal protein L4
- Chain Bu
- Mitochondrial ribosomal protein L45
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