IL_8OIQ_024

3D structure

PDB id

8OIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUAG*CAUC

Length

8 nucleotides

Bulged bases

8OIQ|1|B8|A|506

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIQ_024 not in the Motif Atlas

Homologous match to IL_5J7L_285

Geometric discrepancy: 0.1778

The information below is about IL_5J7L_285

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92446.2

Basepair signature

cWW-cWW-R-L-L

Number of instances in this motif group

5

Unit IDs

8OIQ|1|B8|G|504
8OIQ|1|B8|U|505
8OIQ|1|B8|A|506
8OIQ|1|B8|G|507
*
8OIQ|1|B8|C|521
8OIQ|1|B8|A|522
8OIQ|1|B8|U|523
8OIQ|1|B8|C|524

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BQ

Mitochondrial ribosomal protein L11

Chain BU

uL16m

Chain Bc

mL54