IL_8OIQ_028
3D structure
- PDB id
- 8OIQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GUAACU*AUAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OIQ_028 not in the Motif Atlas
- Homologous match to IL_7RQB_051
- Geometric discrepancy: 0.4386
- The information below is about IL_7RQB_051
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.6
- Basepair signature
- cWW-cWS-cSH-tWH-cWW-L
- Number of instances in this motif group
- 14
Unit IDs
8OIQ|1|B8|G|682
8OIQ|1|B8|U|683
8OIQ|1|B8|A|684
8OIQ|1|B8|A|685
8OIQ|1|B8|C|686
8OIQ|1|B8|U|687
*
8OIQ|1|B8|A|694
8OIQ|1|B8|U|695
8OIQ|1|B8|A|696
8OIQ|1|B8|C|697
Current chains
- Chain B8
- 16S rRNA
Nearby chains
- Chain BA
- uL22m
- Chain BB
- 39S ribosomal protein L23, mitochondrial
- Chain Bi
- 39S ribosomal protein S30, mitochondrial
- Chain Bu
- Mitochondrial ribosomal protein L45
Coloring options: