IL_8OIQ_032

3D structure

PDB id

8OIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIQ_032 not in the Motif Atlas

Geometric match to IL_7RQB_066

Geometric discrepancy: 0.1485

The information below is about IL_7RQB_066

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

8OIQ|1|B8|G|801
8OIQ|1|B8|G|802
8OIQ|1|B8|A|803
8OIQ|1|B8|A|804
*
8OIQ|1|B8|U|988
8OIQ|1|B8|C|989

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BM

ICT1

Chain BS

Mitochondrial ribosomal protein L14