IL_8OIQ_038

3D structure

PDB id

8OIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGC*GUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIQ_038 not in the Motif Atlas

Geometric match to IL_3W3S_003

Geometric discrepancy: 0.1564

The information below is about IL_3W3S_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

8OIQ|1|B8|C|902
8OIQ|1|B8|G|903
8OIQ|1|B8|C|904
*
8OIQ|1|B8|G|917
8OIQ|1|B8|U|918
8OIQ|1|B8|G|919

Current chains

Chain B8

16S rRNA

Nearby chains

Chain AG

P-site Met-tRNA(fMet)