IL_8OIQ_050

3D structure

PDB id

8OIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUA*UAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UUA,UAA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIQ_050 not in the Motif Atlas

Geometric match to IL_4LFB_010

Geometric discrepancy: 0.1747

The information below is about IL_4LFB_010

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8OIQ|1|B8|U|1090
8OIQ|1|B8|U|1091
8OIQ|1|B8|A|1092
*
8OIQ|1|B8|U|1121
8OIQ|1|B8|A|1122
8OIQ|1|B8|A|1123

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BO

Mitochondrial ribosomal protein L9

Chain Bj

39S ribosomal protein L1, mitochondrial