IL_8OIQ_056

3D structure

PDB id

8OIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGU*AUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIQ_056 not in the Motif Atlas

Geometric match to IL_4LFB_061

Geometric discrepancy: 0.161

The information below is about IL_4LFB_061

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

8OIQ|1|B8|U|1286
8OIQ|1|B8|G|1287
8OIQ|1|B8|U|1288
*
8OIQ|1|B8|A|1308
8OIQ|1|B8|U|1309
8OIQ|1|B8|A|1310

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BP

Mitochondrial ribosomal protein L10

Chain BU

uL16m

Chain Bl

Ribosomal protein