IL_8OIQ_057
3D structure
- PDB id
- 8OIQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UCUAG*CGACA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OIQ_057 not in the Motif Atlas
- Homologous match to IL_7A0S_087
- Geometric discrepancy: 0.1959
- The information below is about IL_7A0S_087
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_87767.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
8OIQ|1|B8|U|1289
8OIQ|1|B8|C|1290
8OIQ|1|B8|U|1291
8OIQ|1|B8|A|1292
8OIQ|1|B8|G|1293
*
8OIQ|1|B8|C|1303
8OIQ|1|B8|G|1304
8OIQ|1|B8|A|1305
8OIQ|1|B8|C|1306
8OIQ|1|B8|A|1307
Current chains
- Chain B8
- 16S rRNA
Nearby chains
- Chain Aa
- Peptide chain release factor 1, mitochondrial
- Chain BU
- uL16m
- Chain Bc
- mL54
- Chain Bl
- Ribosomal protein
Coloring options: