IL_8OIQ_065

3D structure

PDB id

8OIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCAAC*GCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIQ_065 not in the Motif Atlas

Geometric match to IL_7RQB_051

Geometric discrepancy: 0.1798

The information below is about IL_7RQB_051

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.6

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

14

Unit IDs

8OIQ|1|B8|C|1483
8OIQ|1|B8|C|1484
8OIQ|1|B8|A|1485
8OIQ|1|B8|A|1486
8OIQ|1|B8|C|1487
*
8OIQ|1|B8|G|1497
8OIQ|1|B8|C|1498
8OIQ|1|B8|G|1499

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BM

ICT1

Chain BS

Mitochondrial ribosomal protein L14

Chain BX

39S ribosomal protein L19, mitochondrial