IL_8OIQ_073

3D structure

PDB id

8OIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCC*GAGG

Length

7 nucleotides

Bulged bases

8OIQ|1|B8|A|976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIQ_073 not in the Motif Atlas

Geometric match to IL_7A0S_107

Geometric discrepancy: 0.234

The information below is about IL_7A0S_107

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

8OIQ|1|B8|C|821
8OIQ|1|B8|C|822
8OIQ|1|B8|C|823
*
8OIQ|1|B8|G|975
8OIQ|1|B8|A|976
8OIQ|1|B8|G|977
8OIQ|1|B8|G|978

Current chains

Chain B8

16S rRNA

Nearby chains