IL_8OIR_021

3D structure

PDB id

8OIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S human mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIR_021 not in the Motif Atlas

Geometric match to IL_3WBM_004

Geometric discrepancy: 0.3864

The information below is about IL_3WBM_004

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_18188.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

8OIR|1|AA|C|373
8OIR|1|AA|U|374
8OIR|1|AA|A|375
*
8OIR|1|AA|U|382
8OIR|1|AA|G|383

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AE

28S ribosomal protein S6, mitochondrial

Chain AP

28S ribosomal protein S18c, mitochondrial

Chain AQ

28S ribosomal protein S21, mitochondrial

Chain Ac

Coiled-coil-helix-coiled-coil-helix domain-containing protein 1