IL_8OIR_024

3D structure

PDB id

8OIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S human mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AAC*GCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIR_024 not in the Motif Atlas

Geometric match to IL_3MEI_002

Geometric discrepancy: 0.131

The information below is about IL_3MEI_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8OIR|1|AA|A|462
8OIR|1|AA|A|463
8OIR|1|AA|C|464
*
8OIR|1|AA|G|483
8OIR|1|AA|C|484
8OIR|1|AA|U|485

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AJ

28S ribosomal protein S12, mitochondrial

Chain AN

28S ribosomal protein S17, mitochondrial

Chain AT

28S ribosomal protein S25, mitochondrial

Chain Ac

Coiled-coil-helix-coiled-coil-helix domain-containing protein 1

Chain Ad

28S ribosomal protein S5, mitochondrial