IL_8OIR_031

3D structure

PDB id

8OIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S human mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCU*AG

Length

5 nucleotides

Bulged bases

8OIR|1|AA|C|607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIR_031 not in the Motif Atlas

Homologous match to IL_5J7L_046

Geometric discrepancy: 0.1496

The information below is about IL_5J7L_046

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8OIR|1|AA|C|606
8OIR|1|AA|C|607
8OIR|1|AA|U|608
*
8OIR|1|AA|A|691
8OIR|1|AA|G|692

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AK

28S ribosomal protein S14, mitochondrial

Chain AZ

28S ribosomal protein S33, mitochondrial

Chain Aa

Peptide chain release factor 1, mitochondrial

Chain Ad

28S ribosomal protein S5, mitochondrial