IL_8OIR_035

3D structure

PDB id

8OIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S human mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUC*GUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIR_035 not in the Motif Atlas

Geometric match to IL_5J7L_050

Geometric discrepancy: 0.0988

The information below is about IL_5J7L_050

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

8OIR|1|AA|A|619
8OIR|1|AA|U|620
8OIR|1|AA|C|621
*
8OIR|1|AA|G|676
8OIR|1|AA|U|677
8OIR|1|AA|U|678

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AC

28S ribosomal protein S24, mitochondrial

Chain AH

28S ribosomal protein S10, mitochondrial

Chain AI

mRNA

Chain AK

28S ribosomal protein S14, mitochondrial

Chain Aa

Peptide chain release factor 1, mitochondrial

Chain Ad

28S ribosomal protein S5, mitochondrial