IL_8OIR_036
3D structure
- PDB id
- 8OIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S human mitochondrial ribosome with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAAA*UAAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OIR_036 not in the Motif Atlas
- Geometric match to IL_1SAQ_002
- Geometric discrepancy: 0.1666
- The information below is about IL_1SAQ_002
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.13
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 34
Unit IDs
8OIR|1|AA|C|627
8OIR|1|AA|A|628
8OIR|1|AA|A|629
8OIR|1|AA|A|630
*
8OIR|1|AA|U|651
8OIR|1|AA|A|652
8OIR|1|AA|A|653
8OIR|1|AA|G|654
Current chains
- Chain AA
- 12S rRNA
Nearby chains
- Chain AB
- 28S ribosomal protein S35, mitochondrial
- Chain AC
- 28S ribosomal protein S24, mitochondrial
- Chain Ab
- 28S ribosomal protein S2, mitochondrial
- Chain Ad
- 28S ribosomal protein S5, mitochondrial
- Chain Ag
- 28S ribosomal protein S9, mitochondrial
Coloring options: