IL_8OIR_042
3D structure
- PDB id
- 8OIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S human mitochondrial ribosome with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CACCC*GACAAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OIR_042 not in the Motif Atlas
- Homologous match to IL_6CZR_167
- Geometric discrepancy: 0.5862
- The information below is about IL_6CZR_167
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_49751.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 18
Unit IDs
8OIR|1|AA|C|844
8OIR|1|AA|A|845
8OIR|1|AA|C|846
8OIR|1|AA|C|847
8OIR|1|AA|C|848
*
8OIR|1|AA|G|907
8OIR|1|AA|A|908
8OIR|1|AA|C|909
8OIR|1|AA|A|910
8OIR|1|AA|A|911
8OIR|1|AA|G|912
Current chains
- Chain AA
- 12S rRNA
Nearby chains
- Chain AD
- Aurora kinase A-interacting protein
- Chain AI
- mRNA
- Chain AJ
- 28S ribosomal protein S12, mitochondrial
- Chain Aa
- Peptide chain release factor 1, mitochondrial
- Chain B8
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: