IL_8OIR_045

3D structure

PDB id

8OIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S human mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UC*GCA

Length

5 nucleotides

Bulged bases

8OIR|1|AA|C|892

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIR_045 not in the Motif Atlas

Geometric match to IL_3SN2_002

Geometric discrepancy: 0.276

The information below is about IL_3SN2_002

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

8OIR|1|AA|U|863
8OIR|1|AA|C|864
*
8OIR|1|AA|G|891
8OIR|1|AA|C|892
8OIR|1|AA|A|893

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AD

Aurora kinase A-interacting protein

Chain Aj

28S ribosomal protein S34, mitochondrial

Chain B8

Large subunit ribosomal RNA; LSU rRNA

Chain BS

39S ribosomal protein L14, mitochondrial