IL_8OIR_060

3D structure

PDB id

8OIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S human mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUC*GUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIR_060 not in the Motif Atlas

Homologous match to IL_7RQB_022

Geometric discrepancy: 0.1303

The information below is about IL_7RQB_022

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_05564.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

14

Unit IDs

8OIR|1|B8|C|278
8OIR|1|B8|G|279
8OIR|1|B8|U|280
8OIR|1|B8|C|281
*
8OIR|1|B8|G|296
8OIR|1|B8|U|297
8OIR|1|B8|G|298

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BJ

39S ribosomal protein L34, mitochondrial