IL_8OIR_061

3D structure

PDB id

8OIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S human mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAG*CUACC

Length

8 nucleotides

Bulged bases

8OIR|1|B8|A|316, 8OIR|1|B8|U|328, 8OIR|1|B8|A|329, 8OIR|1|B8|C|330

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIR_061 not in the Motif Atlas

Geometric match to IL_7A0S_021

Geometric discrepancy: 0.1124

The information below is about IL_7A0S_021

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_89509.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

8OIR|1|B8|G|315
8OIR|1|B8|A|316
8OIR|1|B8|G|317
*
8OIR|1|B8|C|327
8OIR|1|B8|U|328
8OIR|1|B8|A|329
8OIR|1|B8|C|330
8OIR|1|B8|C|331

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BA

39S ribosomal protein L22, mitochondrial

Chain BE

39S ribosomal protein L28, mitochondrial

Chain BJ

39S ribosomal protein L34, mitochondrial

Chain BL

39S ribosomal protein L2, mitochondrial

Chain BN

39S ribosomal protein L4, mitochondrial

Chain Bu

39S ribosomal protein L45, mitochondrial