IL_8OIR_075

3D structure

PDB id

8OIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S human mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACUCGG*CUGU

Length

10 nucleotides

Bulged bases

8OIR|1|B8|G|985

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIR_075 not in the Motif Atlas

Geometric match to IL_5J7L_307

Geometric discrepancy: 0.1011

The information below is about IL_5J7L_307

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76758.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

8OIR|1|B8|A|803
8OIR|1|B8|C|804
8OIR|1|B8|U|805
8OIR|1|B8|C|806
8OIR|1|B8|G|807
8OIR|1|B8|G|808
*
8OIR|1|B8|C|983
8OIR|1|B8|U|984
8OIR|1|B8|G|985
8OIR|1|B8|U|986

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BM

39S ribosomal protein L3, mitochondrial

Chain BS

39S ribosomal protein L14, mitochondrial

Chain BX

39S ribosomal protein L19, mitochondrial