IL_8OIR_084

3D structure

PDB id

8OIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S human mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUG*CU

Length

5 nucleotides

Bulged bases

8OIR|1|B8|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIR_084 not in the Motif Atlas

Homologous match to IL_7RQB_080

Geometric discrepancy: 0.1195

The information below is about IL_7RQB_080

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.16

Basepair signature

cWW-L-cWW

Number of instances in this motif group

116

Unit IDs

8OIR|1|B8|A|1060
8OIR|1|B8|U|1061
8OIR|1|B8|G|1062
*
8OIR|1|B8|C|1259
8OIR|1|B8|U|1260

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BN

39S ribosomal protein L4, mitochondrial

Chain BT

39S ribosomal protein L15, mitochondrial

Chain Bu

39S ribosomal protein L45, mitochondrial