IL_8OIR_089
3D structure
- PDB id
- 8OIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S human mitochondrial ribosome with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUAAG*CAAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OIR_089 not in the Motif Atlas
- Geometric match to IL_5J7L_274
- Geometric discrepancy: 0.2041
- The information below is about IL_5J7L_274
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
8OIR|1|B8|C|1186
8OIR|1|B8|U|1187
8OIR|1|B8|A|1188
8OIR|1|B8|A|1189
8OIR|1|B8|G|1190
*
8OIR|1|B8|C|1202
8OIR|1|B8|A|1203
8OIR|1|B8|A|1204
8OIR|1|B8|A|1205
8OIR|1|B8|G|1206
Current chains
- Chain B8
- 16S rRNA
Nearby chains
- Chain BD
- 39S ribosomal protein L27, mitochondrial
- Chain BI
- 39S ribosomal protein L33, mitochondrial
- Chain BK
- 39S ribosomal protein L35, mitochondrial
- Chain BW
- 39S ribosomal protein L18, mitochondrial
- Chain Bf
- Peptidyl-tRNA hydrolase ICT1, mitochondrial
- Chain Bn
- 39S ribosomal protein L38, mitochondrial
Coloring options: