IL_8OIR_093
3D structure
- PDB id
- 8OIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S human mitochondrial ribosome with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUC*GGUUU
- Length
- 8 nucleotides
- Bulged bases
- 8OIR|1|B8|U|1308
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OIR_093 not in the Motif Atlas
- Geometric match to IL_7RQB_094
- Geometric discrepancy: 0.1305
- The information below is about IL_7RQB_094
- Detailed Annotation
- Major groove minor groove platform with extra cWW
- Broad Annotation
- Major groove minor groove platform; mini C-loop
- Motif group
- IL_92788.2
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 14
Unit IDs
8OIR|1|B8|A|1276
8OIR|1|B8|U|1277
8OIR|1|B8|C|1278
*
8OIR|1|B8|G|1306
8OIR|1|B8|G|1307
8OIR|1|B8|U|1308
8OIR|1|B8|U|1309
8OIR|1|B8|U|1310
Current chains
- Chain B8
- 16S rRNA
Nearby chains
- Chain Aa
- Peptide chain release factor 1, mitochondrial
- Chain BD
- 39S ribosomal protein L27, mitochondrial
- Chain BP
- 39S ribosomal protein L10, mitochondrial
- Chain BU
- 39S ribosomal protein L16, mitochondrial
- Chain Be
- Ribosomal protein 63, mitochondrial
Coloring options: