IL_8OIR_095

3D structure

PDB id

8OIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S human mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAG*CA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIR_095 not in the Motif Atlas

Geometric match to IL_4V88_454

Geometric discrepancy: 0.2345

The information below is about IL_4V88_454

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

8OIR|1|B8|U|1285
8OIR|1|B8|A|1286
8OIR|1|B8|G|1287
*
8OIR|1|B8|C|1297
8OIR|1|B8|A|1298

Current chains

Chain B8

16S rRNA

Nearby chains

Chain Aa

Peptide chain release factor 1, mitochondrial

Chain BU

39S ribosomal protein L16, mitochondrial

Chain Bl

39S ribosomal protein L36, mitochondrial