IL_8OIR_100

3D structure

PDB id

8OIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S human mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GAC,GUC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIR_100 not in the Motif Atlas

Geometric match to IL_5C5W_002

Geometric discrepancy: 0.1702

The information below is about IL_5C5W_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

8OIR|1|B8|G|1405
8OIR|1|B8|A|1406
8OIR|1|B8|C|1407
*
8OIR|1|B8|G|1421
8OIR|1|B8|U|1422
8OIR|1|B8|C|1423

Current chains

Chain B8

16S rRNA

Nearby chains

Chain AG

P-site Met-tRNA(Met)

Chain Aa

Peptide chain release factor 1, mitochondrial

Chain BL

39S ribosomal protein L2, mitochondrial