IL_8OIR_105
3D structure
- PDB id
- 8OIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S human mitochondrial ribosome with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CA*UUUG
- Length
- 6 nucleotides
- Bulged bases
- 8OIR|1|B8|U|1558, 8OIR|1|B8|U|1559
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OIR_105 not in the Motif Atlas
- Geometric match to IL_1U9S_003
- Geometric discrepancy: 0.227
- The information below is about IL_1U9S_003
- Detailed Annotation
- Major groove intercalation
- Broad Annotation
- Major groove intercalation
- Motif group
- IL_71421.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
8OIR|1|B8|C|1542
8OIR|1|B8|A|1543
*
8OIR|1|B8|U|1557
8OIR|1|B8|U|1558
8OIR|1|B8|U|1559
8OIR|1|B8|G|1560
Current chains
- Chain B8
- 16S rRNA
Nearby chains
- Chain BH
- 39S ribosomal protein L32, mitochondrial
- Chain BM
- 39S ribosomal protein L3, mitochondrial
- Chain BV
- 39S ribosomal protein L17, mitochondrial
- Chain Bo
- 39S ribosomal protein L39, mitochondrial
Coloring options: