IL_8OIR_114

3D structure

PDB id

8OIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S human mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAACUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIR_114 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.0829

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

8OIR|1|B8|G|800
8OIR|1|B8|G|801
8OIR|1|B8|A|802
8OIR|1|B8|A|803
8OIR|1|B8|C|804
8OIR|1|B8|U|805
8OIR|1|B8|C|806
8OIR|1|B8|G|807
8OIR|1|B8|G|808
*
8OIR|1|B8|C|983
8OIR|1|B8|U|984
8OIR|1|B8|G|985
8OIR|1|B8|U|986
8OIR|1|B8|C|987

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BM

39S ribosomal protein L3, mitochondrial

Chain BS

39S ribosomal protein L14, mitochondrial

Chain BX

39S ribosomal protein L19, mitochondrial