IL_8OIR_115

3D structure

PDB id

8OIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S human mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAU*AA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIR_115 not in the Motif Atlas

Geometric match to IL_8VTW_003

Geometric discrepancy: 0.2498

The information below is about IL_8VTW_003

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

8OIR|1|B8|U|1074
8OIR|1|B8|A|1075
8OIR|1|B8|U|1076
*
8OIR|1|B8|A|1132
8OIR|1|B8|A|1133

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BE

39S ribosomal protein L28, mitochondrial