IL_8OIS_045

3D structure

PDB id

8OIS (explore in PDB, NAKB, or RNA 3D Hub)

Description

28S human mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UC*GCA

Length

5 nucleotides

Bulged bases

8OIS|1|AA|C|892

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIS_045 not in the Motif Atlas

Geometric match to IL_3SN2_002

Geometric discrepancy: 0.2772

The information below is about IL_3SN2_002

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

67

Unit IDs

8OIS|1|AA|U|863
8OIS|1|AA|C|864
*
8OIS|1|AA|G|891
8OIS|1|AA|C|892
8OIS|1|AA|A|893

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AD

Aurora kinase A-interacting protein

Chain Aj

28S ribosomal protein S34, mitochondrial