IL_8OIT_010

3D structure

PDB id

8OIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAAC*GUGAUAGC

Length

13 nucleotides

Bulged bases

8OIT|1|B8|G|341, 8OIT|1|B8|G|345

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIT_010 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.1343

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8OIT|1|B8|G|236
8OIT|1|B8|A|237
8OIT|1|B8|A|238
8OIT|1|B8|A|239
8OIT|1|B8|C|240
*
8OIT|1|B8|G|339
8OIT|1|B8|U|340
8OIT|1|B8|G|341
8OIT|1|B8|A|342
8OIT|1|B8|U|343
8OIT|1|B8|A|344
8OIT|1|B8|G|345
8OIT|1|B8|C|346

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BN

39S ribosomal protein L4, mitochondrial

Chain BT

39S ribosomal protein L15, mitochondrial

Chain Bz

39S ribosomal protein L51, mitochondrial