IL_8OIT_035

3D structure

PDB id

8OIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAUAAUCACUUG*CCUG

Length

16 nucleotides

Bulged bases

8OIT|1|B8|A|931, 8OIT|1|B8|U|937, 8OIT|1|B8|U|956

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIT_035 not in the Motif Atlas

Homologous match to IL_4WF9_077

Geometric discrepancy: 0.5962

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.1

Basepair signature

cWW-L-R-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

8

Unit IDs

8OIT|1|B8|C|927
8OIT|1|B8|A|928
8OIT|1|B8|U|929
8OIT|1|B8|A|930
8OIT|1|B8|A|931
8OIT|1|B8|U|932
8OIT|1|B8|C|933
8OIT|1|B8|A|934
8OIT|1|B8|C|935
8OIT|1|B8|U|936
8OIT|1|B8|U|937
8OIT|1|B8|G|938
*
8OIT|1|B8|C|954
8OIT|1|B8|C|955
8OIT|1|B8|U|956
8OIT|1|B8|G|957

Current chains

Chain B8

16S rRNA

Nearby chains

Chain Aa

Peptide chain release factor 1, mitochondrial