IL_8OIT_036

3D structure

PDB id

8OIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCAA*UAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIT_036 not in the Motif Atlas

Geometric match to IL_5TBW_091

Geometric discrepancy: 0.2216

The information below is about IL_5TBW_091

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.5

Basepair signature

cWW-cHS-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8OIT|1|B8|G|1042
8OIT|1|B8|C|1043
8OIT|1|B8|A|1044
8OIT|1|B8|A|1045
*
8OIT|1|B8|U|1434
8OIT|1|B8|A|1435
8OIT|1|B8|C|1436

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BH

39S ribosomal protein L32, mitochondrial

Chain BM

39S ribosomal protein L3, mitochondrial

Chain BR

39S ribosomal protein L13, mitochondrial