IL_8OIT_048

3D structure

PDB id

8OIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCU*AACA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIT_048 not in the Motif Atlas

Geometric match to IL_4P3T_002

Geometric discrepancy: 0.2978

The information below is about IL_4P3T_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01472.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

8OIT|1|B8|U|1283
8OIT|1|B8|C|1284
8OIT|1|B8|U|1285
*
8OIT|1|B8|A|1298
8OIT|1|B8|A|1299
8OIT|1|B8|C|1300
8OIT|1|B8|A|1301

Current chains

Chain B8

16S rRNA

Nearby chains

Chain Aa

Peptide chain release factor 1, mitochondrial

Chain BU

39S ribosomal protein L16, mitochondrial

Chain Bl

39S ribosomal protein L36, mitochondrial