IL_8OJ0_064

3D structure

PDB id

8OJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit bound to the E3-UFM1 complex - state 2 (native)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUCUU*AAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OJ0_064 not in the Motif Atlas

Geometric match to IL_8VTW_030

Geometric discrepancy: 0.3557

The information below is about IL_8VTW_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_79529.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

8OJ0|1|5|G|1753
8OJ0|1|5|U|1754
8OJ0|1|5|C|1755
8OJ0|1|5|U|1756
8OJ0|1|5|U|1757
*
8OJ0|1|5|A|1775
8OJ0|1|5|A|1776
8OJ0|1|5|C|1777

Current chains

Chain 5

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein L5

Chain LI

Ribosomal protein uL16-like