IL_8OJ0_070
3D structure
- PDB id
- 8OJ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit bound to the E3-UFM1 complex - state 2 (native)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CGCCCGAUGC*GGG
- Length
- 13 nucleotides
- Bulged bases
- 8OJ0|1|5|G|1919
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OJ0_070 not in the Motif Atlas
- Geometric match to IL_5J7L_286
- Geometric discrepancy: 0.214
- The information below is about IL_5J7L_286
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_42997.3
- Basepair signature
- cWW-L-R-cWW
- Number of instances in this motif group
- 20
Unit IDs
8OJ0|1|5|C|1911
8OJ0|1|5|G|1912
8OJ0|1|5|C|1913
8OJ0|1|5|C|1914
8OJ0|1|5|C|1915
8OJ0|1|5|G|1916
8OJ0|1|5|A|1917
8OJ0|1|5|U|1918
8OJ0|1|5|G|1919
8OJ0|1|5|C|1920
*
8OJ0|1|5|G|2063
8OJ0|1|5|G|2064
8OJ0|1|5|G|2065
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain LF
- 60S ribosomal protein L7
- Chain LO
- 60S ribosomal protein L13a
- Chain LS
- 60S ribosomal protein L18a
- Chain Lf
- 60S ribosomal protein L35a
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