IL_8OJ0_109

3D structure

PDB id

8OJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit bound to the E3-UFM1 complex - state 2 (native)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

8OJ0|1|5|A|3785, 8OJ0|1|5|C|3791, 8OJ0|1|5|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OJ0_109 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.1077

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8OJ0|1|5|C|3781
8OJ0|1|5|C|3782
8OJ0|1|5|A|3783
8OJ0|1|5|A|3784
8OJ0|1|5|A|3785
8OJ0|1|5|U|3786
8OJ0|1|5|G|3787
8OJ0|1|5|C|3788
8OJ0|1|5|C|3789
8OJ0|1|5|U|3790
8OJ0|1|5|C|3791
8OJ0|1|5|G|3792
*
8OJ0|1|5|C|3808
8OJ0|1|5|G|3809
8OJ0|1|5|C|3810
8OJ0|1|5|G|3811

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

E3 UFM1-protein ligase 1