IL_8OJ0_116

3D structure

PDB id

8OJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit bound to the E3-UFM1 complex - state 2 (native)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGUGUAGAAUAAG*UAC

Length

16 nucleotides

Bulged bases

8OJ0|1|5|A|3965

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OJ0_116 not in the Motif Atlas

Geometric match to IL_5UNE_001

Geometric discrepancy: 0.1623

The information below is about IL_5UNE_001

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_87720.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

8

Unit IDs

8OJ0|1|5|G|3955
8OJ0|1|5|G|3956
8OJ0|1|5|U|3957
8OJ0|1|5|G|3958
8OJ0|1|5|U|3959
8OJ0|1|5|A|3960
8OJ0|1|5|G|3961
8OJ0|1|5|A|3962
8OJ0|1|5|A|3963
8OJ0|1|5|U|3964
8OJ0|1|5|A|3965
8OJ0|1|5|A|3966
8OJ0|1|5|G|3967
*
8OJ0|1|5|U|4055
8OJ0|1|5|A|4056
8OJ0|1|5|C|4057

Current chains

Chain 5

28S rRNA

Nearby chains

Chain Lz

60S ribosomal protein L10a