IL_8OJ0_128
3D structure
- PDB id
- 8OJ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit bound to the E3-UFM1 complex - state 2 (native)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUG*UUUUU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OJ0_128 not in the Motif Atlas
- Homologous match to IL_8C3A_113
- Geometric discrepancy: 0.1592
- The information below is about IL_8C3A_113
- Detailed Annotation
- Major groove minor groove platform with extra cWW
- Broad Annotation
- Major groove minor groove platform with extra cWW
- Motif group
- IL_63959.1
- Basepair signature
- cWW-cSH-cWW-cWW
- Number of instances in this motif group
- 18
Unit IDs
8OJ0|1|5|G|4405
8OJ0|1|5|U|4406
8OJ0|1|5|G|4407
*
8OJ0|1|5|U|4435
8OJ0|1|5|U|4436
8OJ0|1|5|U|4437
8OJ0|1|5|U|4438
8OJ0|1|5|U|4439
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- E3 UFM1-protein ligase 1
- Chain LB
- 60S ribosomal protein L3
- Chain LI
- Ribosomal protein uL16-like
Coloring options: