IL_8OJ0_131
3D structure
- PDB id
- 8OJ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit bound to the E3-UFM1 complex - state 2 (native)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CUC*GUGAG
- Length
- 8 nucleotides
- Bulged bases
- 8OJ0|1|5|G|4522, 8OJ0|1|5|A|4523
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OJ0_131 not in the Motif Atlas
- Homologous match to IL_8C3A_116
- Geometric discrepancy: 0.0806
- The information below is about IL_8C3A_116
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_54650.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
8OJ0|1|5|C|4456
8OJ0|1|5|U|4457
8OJ0|1|5|C|4458
*
8OJ0|1|5|G|4520
8OJ0|1|5|U|4521
8OJ0|1|5|G|4522
8OJ0|1|5|A|4523
8OJ0|1|5|G|4524
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain LB
- 60S ribosomal protein L3
- Chain LV
- 60S ribosomal protein L23
Coloring options: