IL_8OJ0_169

3D structure

PDB id

8OJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit bound to the E3-UFM1 complex - state 2 (native)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

8OJ0|1|7|U|84

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OJ0_169 not in the Motif Atlas

Homologous match to IL_8C3A_149

Geometric discrepancy: 0.0896

The information below is about IL_8C3A_149

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

8OJ0|1|7|G|82
8OJ0|1|7|A|83
8OJ0|1|7|U|84
8OJ0|1|7|G|85
*
8OJ0|1|7|C|92
8OJ0|1|7|G|93
8OJ0|1|7|C|94

Current chains

Chain 7

5S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain LF

60S ribosomal protein L7

Chain LI

Ribosomal protein uL16-like

Chain LS

60S ribosomal protein L18a