IL_8OJ5_018

3D structure

PDB id

8OJ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (in-vitro reconstitution)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUC*GCUAC

Length

9 nucleotides

Bulged bases

8OJ5|1|5|C|1301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OJ5_018 not in the Motif Atlas

Geometric match to IL_7MLW_007

Geometric discrepancy: 0.3506

The information below is about IL_7MLW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49140.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

8OJ5|1|5|G|443
8OJ5|1|5|G|444
8OJ5|1|5|U|445
8OJ5|1|5|C|446
*
8OJ5|1|5|G|1300
8OJ5|1|5|C|1301
8OJ5|1|5|U|1302
8OJ5|1|5|A|1303
8OJ5|1|5|C|1304

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain Le

60S ribosomal protein L32

Chain Lf

60S ribosomal protein L35a