IL_8OJ5_029

3D structure

PDB id

8OJ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (in-vitro reconstitution)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AAGG*CAGCAGCACU

Length

14 nucleotides

Bulged bases

8OJ5|1|5|A|932, 8OJ5|1|5|C|934, 8OJ5|1|5|C|936

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OJ5|1|5|A|732
8OJ5|1|5|A|733
8OJ5|1|5|G|734
8OJ5|1|5|G|735
*
8OJ5|1|5|C|928
8OJ5|1|5|A|929
8OJ5|1|5|G|930
8OJ5|1|5|C|931
8OJ5|1|5|A|932
8OJ5|1|5|G|933
8OJ5|1|5|C|934
8OJ5|1|5|A|935
8OJ5|1|5|C|936
8OJ5|1|5|U|937

Current chains

Chain 5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a