IL_8OJ5_118

3D structure

PDB id

8OJ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (in-vitro reconstitution)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGG*CACU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OJ5_118 not in the Motif Atlas

Geometric match to IL_6CZR_168

Geometric discrepancy: 0.2082

The information below is about IL_6CZR_168

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67743.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

9

Unit IDs

8OJ5|1|5|G|3967
8OJ5|1|5|U|3968
8OJ5|1|5|G|3969
8OJ5|1|5|G|3970
*
8OJ5|1|5|C|4052
8OJ5|1|5|A|4053
8OJ5|1|5|C|4054
8OJ5|1|5|U|4055

Current chains

Chain 5

28S rRNA

Nearby chains

Chain Lz

60S ribosomal protein L10a