IL_8OJ5_165
3D structure
- PDB id
- 8OJ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (in-vitro reconstitution)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAACGCG*CUAAGC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OJ5_165 not in the Motif Atlas
- Homologous match to IL_5TBW_373
- Geometric discrepancy: 0.1156
- The information below is about IL_5TBW_373
- Detailed Annotation
- Minor groove platform related
- Broad Annotation
- No text annotation
- Motif group
- IL_10207.3
- Basepair signature
- cWW-cWW-L-cSW-L-R-L-cWW-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
8OJ5|1|7|G|21
8OJ5|1|7|A|22
8OJ5|1|7|A|23
8OJ5|1|7|C|24
8OJ5|1|7|G|25
8OJ5|1|7|C|26
8OJ5|1|7|G|27
*
8OJ5|1|7|C|52
8OJ5|1|7|U|53
8OJ5|1|7|A|54
8OJ5|1|7|A|55
8OJ5|1|7|G|56
8OJ5|1|7|C|57
Current chains
- Chain 7
- 5S rRNA
Nearby chains
- Chain LD
- 60S ribosomal protein L5
- Chain LJ
- 60S ribosomal protein L11
Coloring options: