IL_8OJ5_175

3D structure

PDB id

8OJ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (in-vitro reconstitution)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAUUG*CCAAGCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OJ5|1|5|C|4466
8OJ5|1|5|A|4467
8OJ5|1|5|U|4468
8OJ5|1|5|U|4469
8OJ5|1|5|G|4470
*
8OJ5|1|5|C|4485
8OJ5|1|5|C|4486
8OJ5|1|5|A|4487
8OJ5|1|5|A|4488
8OJ5|1|5|G|4489
8OJ5|1|5|C|4490
8OJ5|1|5|G|4491

Current chains

Chain 5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a

Chain LV

60S ribosomal protein L23

Chain Lm

Ubiquitin-60S ribosomal protein L40