IL_8OJ8_029

3D structure

PDB id

8OJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit bound to the E3-UFM1 complex - state 1 (native)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUUC*GG

Length

6 nucleotides

Bulged bases

8OJ8|1|5|U|513

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OJ8_029 not in the Motif Atlas

Geometric match to IL_5J7L_048

Geometric discrepancy: 0.2431

The information below is about IL_5J7L_048

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

8OJ8|1|5|U|512
8OJ8|1|5|U|513
8OJ8|1|5|U|514
8OJ8|1|5|C|515
*
8OJ8|1|5|G|646
8OJ8|1|5|G|647

Current chains

Chain 5

28S rRNA

Nearby chains

Chain LL

60S ribosomal protein L13