IL_8OJ8_074
3D structure
- PDB id
- 8OJ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit bound to the E3-UFM1 complex - state 1 (native)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CGCCCGAUGC*GGG
- Length
- 13 nucleotides
- Bulged bases
- 8OJ8|1|5|G|1919
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OJ8_074 not in the Motif Atlas
- Geometric match to IL_3GM7_006
- Geometric discrepancy: 0.2176
- The information below is about IL_3GM7_006
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 213
Unit IDs
8OJ8|1|5|C|1911
8OJ8|1|5|G|1912
8OJ8|1|5|C|1913
8OJ8|1|5|C|1914
8OJ8|1|5|C|1915
8OJ8|1|5|G|1916
8OJ8|1|5|A|1917
8OJ8|1|5|U|1918
8OJ8|1|5|G|1919
8OJ8|1|5|C|1920
*
8OJ8|1|5|G|2063
8OJ8|1|5|G|2064
8OJ8|1|5|G|2065
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain LF
- 60S ribosomal protein L7
- Chain LO
- 60S ribosomal protein L13a
- Chain LS
- 60S ribosomal protein L18a
- Chain Lf
- 60S ribosomal protein L35a
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