IL_8OJ8_110

3D structure

PDB id

8OJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit bound to the E3-UFM1 complex - state 1 (native)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

8OJ8|1|5|U|3713

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OJ8_110 not in the Motif Atlas

Geometric match to IL_5TBW_011

Geometric discrepancy: 0.2947

The information below is about IL_5TBW_011

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.3

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

8

Unit IDs

8OJ8|1|5|G|3710
8OJ8|1|5|A|3711
8OJ8|1|5|A|3712
8OJ8|1|5|U|3713
8OJ8|1|5|G|3714
*
8OJ8|1|5|C|3739
8OJ8|1|5|G|3740
8OJ8|1|5|C|3741

Current chains

Chain 5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8