IL_8OJ8_111

3D structure

PDB id

8OJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit bound to the E3-UFM1 complex - state 1 (native)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCAAAGU*AAUGAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OJ8_111 not in the Motif Atlas

Homologous match to IL_8C3A_093

Geometric discrepancy: 0.1493

The information below is about IL_8C3A_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8OJ8|1|5|U|3715
8OJ8|1|5|C|3716
8OJ8|1|5|A|3717
8OJ8|1|5|A|3718
8OJ8|1|5|A|3719
8OJ8|1|5|G|3720
8OJ8|1|5|U|3721
*
8OJ8|1|5|A|3732
8OJ8|1|5|A|3733
8OJ8|1|5|U|3734
8OJ8|1|5|G|3735
8OJ8|1|5|A|3736
8OJ8|1|5|A|3737
8OJ8|1|5|G|3738

Current chains

Chain 5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Li

60S ribosomal protein L36