IL_8OJ8_176

3D structure

PDB id

8OJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit bound to the E3-UFM1 complex - state 1 (native)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUCUU*AAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OJ8_176 not in the Motif Atlas

Geometric match to IL_4WF9_012

Geometric discrepancy: 0.3574

The information below is about IL_4WF9_012

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform; mini C-loop

Motif group

IL_34117.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

7

Unit IDs

8OJ8|1|5|G|1753
8OJ8|1|5|U|1754
8OJ8|1|5|C|1755
8OJ8|1|5|U|1756
8OJ8|1|5|U|1757
*
8OJ8|1|5|A|1775
8OJ8|1|5|A|1776
8OJ8|1|5|C|1777

Current chains

Chain 5

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein L5

Chain LI

Ribosomal protein uL16-like